Watoto Vision on Africa (WVA) has five important management organs namely the General Assembly, the Executive Council, the Coordination Unit, the Audit Committee and Conflict Resolution Committee, the General Assembly is the highest decision-making body.

The Executive Council is responsible for the smooth and effective management of the organisation, the Coordination Unit runs the day to day implementation of WVA activities and is headed by the Country Director.

The Audit Committee controls the funds management and other assets of WVA.

The Conflict Resolution Committee is responsible for finding solutions to disputes which may arise within WVA or between WVA members themselves.